However, if intrinsic parameters change, neural computations are altered drastically.

Unlike commonly used iterative ODE solvers that necessitate time discretization, event-based simulations resolve neural network dynamics precisely between spike events.

Unlike commonly used iterative ODE solvers that necessitate time discretization, event-based simulations resolve neural network dynamics precisely between spike events.

Neural Information Processing Systems http://nips.cc/

The Poisson Generalized Linear Model (GLM) is a foundational tool for analyzing neural spike train data. However, standard implementations rely on discretizing spike times into binned count data, limiting temporal resolution and scalability. Here, we develop Monte Carlo (MC) methods and polynomial approximations (PA) to the continuous-time analog of these models, and show them to be advantageous over their discrete-time counterparts. Further, we propose using a set of exponentially scaled Laguerre polynomials as an orthogonal temporal basis, which improves filter identification and yields closed-form integral solutions under the polynomial approximation. Applied to both synthetic and real spike-time data from rodent hippocampus, our methods demonstrate superior accuracy and scalability compared to traditional binned GLMs, enabling functional connectivity inference in large-scale neural recordings that are temporally precise on the order of synaptic dynamical timescales and in agreement with known anatomical properties of hippocampal subregions. We provide open-source implementations of both MC and PA estimators, optimized for GPU acceleration, to facilitate adoption in the neuroscience community.

Unlike commonly used iterative ODE solvers that necessitate time discretization, event-based simulations resolve neural network dynamics precisely between spike events.

Neurons communicate through spikes, and spike timing is a crucial part of neuronal processing. Spike times can be recorded experimentally both intracellularly and extracellularly, and are the main output of state-of-the-art neural probes. On the other hand, neuronal activity is controlled at the molecular level by the currents generated by many different transmembrane proteins called ion channels. Connecting spike timing to ion channel composition remains an arduous task to date. To address this challenge, we developed a method that combines deep learning with a theoretical tool called Dynamic Input Conductances (DICs), which reduce the complexity of ion channel interactions into three interpretable components describing how neurons spike. Our approach uses deep learning to infer DICs directly from spike times and then generates populations of "twin" neuron models that replicate the observed activity while capturing natural variability in membrane channel composition. The method is fast, accurate, and works using only spike recordings. We also provide open-source software with a graphical interface, making it accessible to researchers without programming expertise.